Installation

Stable version

Install PIASO to your environment:

pip install piaso-tools

Development version

Install PIASO from GitHub directly:

pip install git+https://github.com/genecell/PIASO.git

Environment set-up for PIASO tutorials

conda create --name piaso_env python=3.10 -y
conda activate test_piaso_env
conda install git pip -y
pip install piaso-tools

Quick validation:

python -c "import piaso; print('Success: PIASO installed and imported correctly!')"

Installing ipykernel for jupyter compatibility:

conda install anaconda::ipykernel
python -m ipykernel install --user --name piaso_env --display-name "Python piaso_env"

Additional packages required for tutorials:

pip install 'scanpy[leiden]'
pip install scrublet